Codon/DNA-RNA-Protein Translator implementation

Binding contract

This record describes what an executable surface must bind and validate. It does not claim that a public calculator, package, or production route is deployed.

Record owner

Guth Instruments

Lifecycle

verified-clean

Evidence ID

t7-087

Effect

Computation or source lookup only

Input and validation requirements

The specification provides no stated resource limit or rejection behavior for extreme-length inputs, so a naive lookup implementation can fail through allocation or indexing exhaustion. It also leaves DNA strand orientation ambiguous, allowing the same written sequence to translate as different amino-acid sequences.

Required corrections

No binding erratum is attached to this unique-name record. Implementers must still preserve the declared units, domain, and failure behavior.

Inspectable interface fixture

The sample below is evidence for interface and validation tests, not a production implementation.

{
  "inputs": {
    "sequence": "ATGGCTTGGTAA",
    "sequence_type": "DNA_coding_strand",
    "orientation": "5_to_3",
    "reading_frame": 0
  },
  "expected_outputs": {
    "mrna_sequence": "AUGGCUUGGUAA",
    "codons_used": [
      "AUG",
      "GCU",
      "UGG",
      "UAA"
    ],
    "amino_acid_sequence": [
      "Met",
      "Ala",
      "Trp"
    ],
    "stop_codon_flags": [
      false,
      false,
      false,
      true
    ],
    "translation_terminated_at": "UAA"
  },
  "reference_data": {
    "standard_genetic_code": {
      "AUG": "Met",
      "GCU": "Ala",
      "UGG": "Trp",
      "UAA": "STOP",
      "source_convention": "NCBI Genetic Code, Translational Table 1, Standard Code"
    },
    "coding_DNA_to_mRNA": {
      "T": "U",
      "source_convention": "widely tabulated standard molecular-biology transcription convention"
    }
  },
  "working": "1. Coding DNA ATG GCT TGG TAA is written 5-prime-to-3-prime. 2. Replace each DNA T with RNA U: ATG GCT TGG TAA -> AUG GCU UGG UAA. 3. Look up codons: AUG -> Met; GCU -> Ala; UGG -> Trp; UAA -> STOP. 4. Emit amino acids before the stop: Met-Ala-Trp. 5. Stop flags by codon are false, false, false, true; translation terminates at UAA."
}

Other records

Sources and evidence

These pointers bind the page to evidence. They do not grant authority or collapse verification into deployment.

• VERIFIED_LEDGER.json
• evidence-tranche7/tranche7-results.json